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Broad Institute Inc genome analysis toolkit gatk v3.7
Genome Analysis Toolkit Gatk V3.7, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/genome+analysis+toolkit+(gatk)/gatk+3+2/pmc12275979-78-0-6
Average 90 stars, based on 1 article reviews
genome analysis toolkit gatk v3.7 - by Bioz Stars, 2026-10
90/100 stars

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Related Articles

Variant Assay:

Article Title: Interstitial Cystitis: a phenotype and rare variant exome sequencing study
Article Snippet: Picard (Broad Institute, Boston, MA, USA) was used to mark duplicates ( ). .. Genome Analysis Toolkit (GATK - Broad Institute, Boston, MA, USA) Best Practices recommendations v.3.6 was used for variant calling and annotated was completed with ClinEff ( – ). ..

Article Title: The Relationship of the Pathogenic Variant rs721048 in the Intron of the EHBP1 Gene with the Development of Prostate Cancer and Colorectal Cancer in the Kazakh Population.
Article Snippet: .. Variant calling for specific genomic regions was done using the Genome Analysis Toolkit (GATK, Broad Institute, Cambridge, MA, USA). ..

Article Title: Neurofilament light chain as a biomarker for acute hepatic porphyrias
Article Snippet: .. Identification of variants, including single-nucleotide variants (SNVs) and indels, was conducted in accordance with the best practices of the Broad Institute, employing the Genome Analysis Toolkit (GATK, version 3.8-0-ge9d806836) software, and subsequently annotated using Variant Effect Predictor (VEP, version 88.14). ..

Article Title: Assessing Chitinases and Neurofilament Light Chain as Biomarkers for Adult-Onset Leukodystrophies
Article Snippet: .. Identification of variants, including single-nucleotide variants (SNVs) and indels, was conducted in accordance with the best practices of the Broad Institute, employing the Genome Analysis ToolKit (GATK, version 3.8-0-ge9d806836) software, and subsequently annotated using Variant Effect Predictor (VEP, version 88.14). ..

Software:

Article Title: Neurofilament light chain as a biomarker for acute hepatic porphyrias
Article Snippet: .. Identification of variants, including single-nucleotide variants (SNVs) and indels, was conducted in accordance with the best practices of the Broad Institute, employing the Genome Analysis Toolkit (GATK, version 3.8-0-ge9d806836) software, and subsequently annotated using Variant Effect Predictor (VEP, version 88.14). ..

Article Title: Assessing Chitinases and Neurofilament Light Chain as Biomarkers for Adult-Onset Leukodystrophies
Article Snippet: .. Identification of variants, including single-nucleotide variants (SNVs) and indels, was conducted in accordance with the best practices of the Broad Institute, employing the Genome Analysis ToolKit (GATK, version 3.8-0-ge9d806836) software, and subsequently annotated using Variant Effect Predictor (VEP, version 88.14). ..

other:

Article Title: CD7 CART Therapy Bridging Allo-HSCT Remarkably Improves Long-Term DFS in Refractory/Relapsed T-ALL/LBL.
Article Snippet: T-ALL is caused by abnormal proliferation of T cells.. It comprises 25%-50% of ALL cases in children and adults.. Outlook for R/R T-ALL/LBL and patients over 60 even dimmer.



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